volume
Class VolumeInteger

java.lang.Object
  |
  +--volume.Volume
        |
        +--volume.VolumeInteger

All Implemented Interfaces:

java.io.Serializable

public class VolumeInteger

extends Volume

This class implements int volumes and operations including convolutions on it. Copyright (c) 1999-2002, Michael Abramoff. All rights reserved.

See Also:

Serialized Form

Field Summary

int[][][]

v

Fields inherited from class volume.Volume

aspectx, aspecty, aspectz, depth, edge, height, width

Constructor Summary

VolumeInteger()

VolumeInteger(ij.process.ImageProcessor ip)

VolumeInteger(ij.ImageStack s)

VolumeInteger(ij.ImageStack s, double aspectx, double aspecty, double aspectz)

VolumeInteger(ij.ImageStack s, int depth, int n)
Creates a volume from an ImageStack, with depth slices from n * depth.

VolumeInteger(ij.ImageStack s, int depth, int n, double aspectx, double aspecty, double aspectz)

VolumeInteger(int width, int height, int depth)

VolumeInteger(int width, int height, int depth, double aspectx, double aspecty, double aspectz)

Method Summary

java.lang.Object	get(int x, int y, int z) Fill the volume from stack s with depth slices from start.
int[][][]	getVolume()
void	load(ij.process.ImageProcessor ip, int t)
void	load(ij.ImageStack s, int start)
protected void	loadImage(int[][] i, byte[] b)
protected void	loadImage(int[][] i, int[] sh)
void	loadInverse(ij.ImageStack s, int center)
protected void	loadSlice(int[][] i, ij.ImageStack s, int io)
void	set(java.lang.Object i, int x, int y, int z) Set the voxel at x,y,z to value.

Methods inherited from class volume.Volume

discreteSupport, getAspectx, getAspecty, getAspectz, getDepth, getEdge, getHeight, getWidth, in, setAspects, setEdge, toString, valid, valid

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

v

public int[][][] v

Constructor Detail

VolumeInteger

public VolumeInteger()

VolumeInteger

public VolumeInteger(int width,
                     int height,
                     int depth)

VolumeInteger

public VolumeInteger(int width,
                     int height,
                     int depth,
                     double aspectx,
                     double aspecty,
                     double aspectz)

VolumeInteger

public VolumeInteger(ij.ImageStack s,
                     double aspectx,
                     double aspecty,
                     double aspectz)

VolumeInteger

public VolumeInteger(ij.ImageStack s)

VolumeInteger

public VolumeInteger(ij.process.ImageProcessor ip)

VolumeInteger

public VolumeInteger(ij.ImageStack s,
                     int depth,
                     int n)

Creates a volume from an ImageStack, with depth slices from n * depth. This is used to extract n-th volume from an ImageStack representing a hypervolume (multiple volumes in one stack).

VolumeInteger

public VolumeInteger(ij.ImageStack s,
                     int depth,
                     int n,
                     double aspectx,
                     double aspecty,
                     double aspectz)

Method Detail

getVolume

public int[][][] getVolume()

get

public java.lang.Object get(int x,
                            int y,
                            int z)

Fill the volume from stack s with depth slices from start.

Overrides:

get in class Volume

Following copied from class: volume.Volume

Parameters:

x, - y, z the position in the volume you want the value of.

Returns:

the value of the volume at x,y,z.

set

public void set(java.lang.Object i,
                int x,
                int y,
                int z)

Description copied from class: Volume

Set the voxel at x,y,z to value.

Overrides:

set in class Volume

Following copied from class: volume.Volume

Parameters:

value - a value suitable for this volume.

x, - y, z the position in the volume.

load

public void load(ij.ImageStack s,
                 int start)

load

public void load(ij.process.ImageProcessor ip,
                 int t)

loadInverse

public void loadInverse(ij.ImageStack s,
                        int center)

loadSlice

protected void loadSlice(int[][] i,
                         ij.ImageStack s,
                         int io)

loadImage

protected void loadImage(int[][] i,
                         byte[] b)

loadImage

protected void loadImage(int[][] i,
                         int[] sh)