VolumeJ
Class VJSurfaceJ

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Window
                    |
                    +--java.awt.Frame
                          |
                          +--ij.plugin.frame.PlugInFrame
                                |
                                +--VolumeJ.VJUserInterface
                                      |
                                      +--VolumeJ.VJSurfaceJ

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.util.EventListener, java.awt.event.FocusListener, java.awt.image.ImageObserver, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.MenuContainer, ij.plugin.PlugIn, java.io.Serializable, java.awt.event.WindowListener

public class VJSurfaceJ

extends VJUserInterface

implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ItemListener, java.awt.event.KeyListener

This class offers SurfaceJ, a surface plotting plugin based on VJ.
Copyright (c) 1999-2002, Michael Abramoff. All rights reserved.

See Also:

Serialized Form

Inner classes inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Inner classes inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.AWTTreeLock

Field Summary

protected java.awt.Button	renderSurfaceplot
protected static float	sigma
protected java.awt.TextField	sigmaField
protected static java.lang.String	VERSION

Fields inherited from class VolumeJ.VJUserInterface

aspectField, aspectx, aspecty, aspectz, axisChoice, backCheckbox, cineField, cineNField, classificationChoice, classifier, classifierTextArea, cutoutCheckbox, cutoutField, defaultDirectory, deviation, diskCheckbox, gradientChoice, iList, indexChoice, initializing, instance, interpolationChoice, ISOSURFACE, lightField, lightx, lighty, lightz, lutChoice, mappingChoice, number, RAYTRACE, render, renderCine, renderer, renderExtra, renderStereo, renderStop, rotField, rs, scale, scaleField, shader, sourceChoice, testCheckbox, threshold, thresholdField, traceCheckbox, traceField, v, VIEWSPACE, widthField, xrot, yrot, zrot

Fields inherited from class ij.plugin.frame.PlugInFrame

title

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, icon, ICONIFIED, mbManagement, menuBar, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, ownedWindows, resizable, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Window

inputContext, OPENED, ownedWindowList, state, warningString, windowListener

Fields inherited from class java.awt.Container

component, containerListener, layoutMgr, listeningBoundsChildren, listeningChildren, ncomponents

Fields inherited from class java.awt.Component

accessibleContext, actionListenerK, adjustmentListenerK, appContext, background, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, componentListener, componentListenerK, componentOrientation, containerListenerK, cursor, dropTarget, enabled, eventMask, focusListener, focusListenerK, font, foreground, graphicsConfig, hasFocus, height, hierarchyBoundsListener, hierarchyBoundsListenerK, hierarchyListener, hierarchyListenerK, incRate, inputMethodListener, inputMethodListenerK, isInc, isPacked, itemListenerK, keyListener, keyListenerK, LEFT_ALIGNMENT, locale, LOCK, metrics, minSize, mouseListener, mouseListenerK, mouseMotionListener, mouseMotionListenerK, newEventsOnly, ownedWindowK, parent, peer, peerFont, popups, prefSize, RIGHT_ALIGNMENT, textListenerK, TOP_ALIGNMENT, valid, visible, width, windowClosingException, windowListenerK, x, y

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

VJSurfaceJ()
Open a new dialog.

Method Summary

protected void	activateButtons(int listLength) Activate the rendering and surface plot buttons, depending on whether or not there is a stack, an image, or nothing available.
protected int[]	getImageWindows() Get the ids of all open windows that are suitable for this plugin.
boolean	getLUT(VJClassifier classifier, java.lang.String path) Set the LUT of a classifier from an ImageJ or NIH LUT file.
protected void	perform(java.awt.AWTEvent e) React to Event e.
protected VJClassifier	resetClassifier(int index, int lutIndex) Create and setup a classifier according to the classifier number index (index only valid within VJUserInterface).
void	showDialog() Sets up the dialog window with all (dynamic) elements filled in.

Methods inherited from class VolumeJ.VJUserInterface

actionPerformed, createChoice, createChoice, createChoice, createTextField, createTextField, createXYZField, createXYZField, createXYZField, error, getFloatField, getIntField, getLongField, getWindowNames, itemStateChanged, keyPressed, keyReleased, keyTyped, lostOwnership, progress, propagateClassifier, resetRenderer, resetShader, resetVolume, status, windowClosing, write, write

Methods inherited from class ij.plugin.frame.PlugInFrame

close, focusGained, focusLost, run, windowActivated, windowClosed, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.awt.Frame

, addNotify, addToFrameList, constructComponentName, finalize, getAccessibleContext, getCursorType, getFrames, getIconImage, getMenuBar, getState, getTitle, isResizable, paramString, postProcessKeyEvent, remove, removeFromFrameList, removeNotify, setCursor, setIconImage, setMenuBar, setResizable, setState, setTitle

Methods inherited from class java.awt.Window

addOwnedWindow, addWindowListener, adjustListeningChildren, applyResourceBundle, applyResourceBundle, connectOwnedWindow, dispatchEventImpl, dispose, eventEnabled, getFocusOwner, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getOwnedWindows, getOwner, getToolkit, getWarningString, hide, isActive, isShowing, nextFocus, pack, postEvent, postWindowEvent, preProcessKeyEvent, processEvent, processWindowEvent, removeOwnedWindow, removeWindowListener, resetGC, setCursor, setFocusOwner, show, toBack, toFront, transferFocus

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyOrientation, checkGD, countComponents, createChildHierarchyEvents, createHierarchyEvents, deliverEvent, dispatchEventToSelf, doLayout, findComponentAt, findComponentAt, findComponentAt, getAccessibleAt, getAccessibleChild, getAccessibleChildrenCount, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents_NoClientCode, getComponents, getInsets, getLayout, getMaximumSize, getMinimumSize, getMouseEventTarget, getPreferredSize, getWindow, insets, invalidate, invalidateTree, isAncestorOf, layout, lightweightPaint, lightweightPrint, list, list, locate, minimumSize, numListening, paint, paintComponents, paintHeavyweightComponents, postsOldMouseEvents, preferredSize, print, printComponents, printHeavyweightComponents, processContainerEvent, proxyEnableEvents, proxyRequestFocus, remove, remove, removeAll, removeContainerListener, setFont, setLayout, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, addPropertyChangeListener, areInputMethodsEnabled, bounds, checkImage, checkImage, checkWindowClosingException, coalesceEvents, contains, contains, createImage, createImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getAccessibleIndexInParent, getAccessibleStateSet, getBackground, getBounds, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont_NoClientCode, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getInputMethodRequests, getLocation, getLocation, getLocationOnScreen_NoTreeLock, getLocationOnScreen, getName, getNativeContainer, getParent_NoClientCode, getParent, getPeer, getSize, getSize, getToolkitImpl, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isDisplayable, isDoubleBuffered, isEnabled, isEnabledImpl, isFocusTraversable, isLightweight, isOpaque, isRecursivelyVisible, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setDropTarget, setEnabled, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.ActionListener

actionPerformed

Methods inherited from interface java.awt.datatransfer.ClipboardOwner

lostOwnership

Methods inherited from interface java.awt.event.ItemListener

itemStateChanged

Methods inherited from interface java.awt.event.KeyListener

keyPressed, keyReleased, keyTyped

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

VERSION

protected static final java.lang.String VERSION

sigmaField

protected java.awt.TextField sigmaField

renderSurfaceplot

protected java.awt.Button renderSurfaceplot

sigma

protected static float sigma

Constructor Detail

VJSurfaceJ

public VJSurfaceJ()

Open a new dialog.

Method Detail

showDialog

public void showDialog()

Sets up the dialog window with all (dynamic) elements filled in.

Overrides:

showDialog in class VJUserInterface

perform

protected void perform(java.awt.AWTEvent e)

React to Event e.

Overrides:

perform in class VJUserInterface

Parameters:

e - an Event.

resetClassifier

protected VJClassifier resetClassifier(int index,
                                       int lutIndex)

Create and setup a classifier according to the classifier number index (index only valid within VJUserInterface).

Overrides:

resetClassifier in class VJUserInterface

Parameters:

index - the local index number of the classifier in VJClassifiers. NOT USED

lutIndex - a flag indicating what LUT to use. 0 is built in LUT, 1 = user loadable LUT.

Returns:

a VJClassifier.

getImageWindows

protected int[] getImageWindows()

Get the ids of all open windows that are suitable for this plugin. The id's can be used by the .getImage(id) method.

Overrides:

getImageWindows in class VJUserInterface

Returns:

an int[] containg the ids of the stacks.

activateButtons

protected void activateButtons(int listLength)

Activate the rendering and surface plot buttons, depending on whether or not there is a stack, an image, or nothing available.

Overrides:

activateButtons in class VJUserInterface

Parameters:

iListLength - the number of stacks available when VolumeJ started.

getLUT

public boolean getLUT(VJClassifier classifier,
                      java.lang.String path)

Set the LUT of a classifier from an ImageJ or NIH LUT file.

Overrides:

getLUT in class VJUserInterface

Parameters:

classifier, - a VJClassifier for which you want to read the LUT.

path - a filename to be read. Get from defaultpath, if defaultpath == "", ask user for filename.

Returns:

true if LUT of classifier was sucessfully set, false otherwise.