Re: A DNA analysis question -additional

From: Howard Shapiro (hms@shapirolab.com)
Date: Tue Dec 21 1999 - 19:41:54 EST


Nick Terry writes:

>IMHO adequate DNA measurements can only be made if the
>cross section of your interogating beam is substantially narrower than the
>diameter of the objects that you are measuring.
>
>(Waiting for flames.)
>
>Under these conditions 2 G1 cells stuck together will have a very similar
>integral (yes - mostly the same as area) signal as a true single G2/M cell.
>The peak signal from a G2/M cell will however be significantly greater than
>that from a G1 cell and from the sequential peak signals from a G1G1
>doublet. But, the latter is only visible if the exciting beam is narrow.
>In comparisons between area/width and integral (area)/peak discriminating
>ability on an instrument with 5 micron excitation optics the integral peak
>analysis gave the best discrimination. It is even possible to recognize
>doublets that are not progressing linearly through the beam due to
>turbulence or other factors.
>
>How anyone manages to discriminate doublets from true G2 cells with a 40
>micron beam, or nuclei with a 15-20 micron beam is beyond me. (tactfully).
>
>(Pondering the likelihood that there is a greater proportion of tetraploid
>tumors in the literature than in reality.)

Yes, one does need a narrow beam for doublet discrimination, but the most 
precise DNA measurements are made with arc source systems, notably the 
Partec, but also Lindmo and Steen's (Skatron, Bruker, Bio-Rad, etc.) 
design, where the beam is substantially larger than the cells, and the 
nondirectional illumination is important in getting the precision...

Only a warmish breeze; not a flame, I hope.

-Howard



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