FISH and flow cytometry

From: dkaplan@flow-amp.com
Date: Tue Jan 15 2002 - 16:27:03 EST


Cheryl,

Concerning fluorescent in situ hybridization for the detection of mRNA
species by flow cytometry, sensitivity is a major problem.  In situ RT-PCR
has not worked well.  We have used our enzymatic amplification staining
(EAS) technology for this problem and have achieved excellent results
(attached 2 powerpoint figures).  Flow-Amp's EAS kit for intracellular
antigens with FITC conjugated primary antibodies was used with substitution
of a FITC conjugated cDNA probe for Epstein-Barr Virus EBER1 RNA instead of
an antibody.  The difficulty in the procedure was getting the hybridization
conditions right but the results were impressive.

David

David Kaplan, MD, PhD
Professor of Pathology
Case Western Reserve University
Co-Founder, Flow-Amp Systems





Hello All,
I've had a query from one of our facility users regarding the ability of
flow cytometry to detect single FISH probes.  The most recent posting from
the group that I can find is from 1996 and I'm wondering if everyone has
simply decided that flow is not sensitive enough for this.  It was
mentioned that incorporation of digoxigenin into the PCR reaction
apparently increased single to noise ratio, but is it really enough  to
enable detection?  Any input would be greatly appreciated.

Thanks,
Cheryl







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