RE: intracellular cytokine staining data

From: Donnenberg, Albert (donnenbergad@MSX.UPMC.EDU)
Date: Fri Nov 16 2001 - 11:12:53 EST


Gib-
Many statistics packages allow you to create a "probability plot"  to
visually determine whether your data (or a transform of your data)
approximates a normal distribution.  Like antibody titers, white blood
counts, and thymidine uptake data, rare event data (expressed as a
reciprocal frequency or as a percent) often approximate a log-normal
distribution.  We have published this for tetramer data.  I would not be
surprised if intracellular cytokine measurements are log-normally
distributed as well.  The best thing to do is to take a look.

Albert Donnenberg

 We are performing intracellular cytokine measurements for evaluation of
experimental vaccines and I am wondering about how to express the frequency
data.  What is more meaningful, the frequency or the logarithm of the
frequency?  I'll try to put this question into context.  When compiling
statistics on antibody titers it is standard to compute the geometric mean
titer for a group of vaccinees under the assumption that the logarithms of
the titers follow a normal (gaussian) distribution.  Also, when we compile
statistics on lymphoproliferation stimulation indices we calculate the
geometric mean for the group of vaccinees.  Here we find that the standard
deviation of the measured stimulation index is proportional the mean and
therefore the standard deviation of the log-transformed stimulation index is
nearly constant .  Does anyone have any insights into how best to express
intracellular cytokine frequency data, linear or log (or other) based on
data or on theoretical considerations?

Gib Otten
Chiron Corp.
4560 Horton St., M/S 4.3
Emeryville, CA	94608
Telephone: 510-923-2965
Fax: 510-923-2586
mailto:Gillis_Otten@chiron.com



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