Dear Flowers, We are having difficulty with 'autofluorescence' of a cell population in a flow study involving mouse peritoneal mast cells. The problem is not so much with the mast cells, but with whatever else comes up in the peritoneal lavage. Isotype background of the mast cells is clean, and our positive signal is well into the third log. Forward and side scatter gating on the population of interest (heterogenous FSC / high side scatter) includes a highly autofluorescent population (second log) which may mask intermediate / down regulated c-kit positive mast cells. Isolation by density gradient resulted in low yields of mast cells (and the risk of preferential exclusion of the population of interest); attempts to reduce autofluorescence by trypan blue (Cytometry v.30 no 3; June 15 1997) have not succeeded so far, and I doubt it could reduce it to the level required. I would appreciate any ideas on how to effectively gate on the mast cells, reduce autofluorescence of the 'intruders' or isolate one or the other populations. Thanks, Claude
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