Re: Kolmogorov-Smirnov

From: A.J. Rossini (rossini@blindglobe.net)
Date: Tue Apr 15 2003 - 16:59:22 EST


Boros András dr. <a.boros@richter.hu> writes:

> Can you help me to comprehend the K-S analysis offered by CellQuest
> software from BD. It says that even the same sample histogram can be
> higly significantly different ! What made I wrong ? (Of course I'm
> not a mathemathician !)

This is a common problem with comparing large datasets.  With most
"modern" flow data, you reach the point where comparison of
distributions resulting from 10k or more per sample will be
significant, no matter what you do.  It is quite likely that
"difference of distributions" is not exactly what you want.
Unfortunately, I don't yet have any general suggestions (specific
cases, some, but necessarily for all cases).

best,
-tony

--
A.J. Rossini rossini@u.washington.edu http://software.biostat.washington.edu/
Biostatistics, U Washington and Fred Hutchinson Cancer Research Center

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