A FACS related problem

From: sanjeev@nii.ernet.in
Date: Fri Sep 24 1993 - 09:46:40 EST


A certain molecule is expressed on the surface of two different cell lines at 
similar levels, but (probably) in two different conformations. I have a 
monoclonal that (probably!) discriminates between the two conformations. In 
comparing the staining pattern of these two cell lines  I face the following 
problem.
The (no first Ab) conjugate controls for these two cell lines stain at two 
different levels, so that it becomes impossible to compare the test 
stainings. 
1)If I change the voltage for one cell line to  match its control staining to 
that of the other, won't it bring about a more dramatic (and unreal) effect 
on the test staining for this particular cell line?
2)Or can I just superimpose the two control stainings and compare then compare 
the stainings with the monoclonal in question?
If anyone could throw some light on this aspect of FACS data analysis I will 
be really greatful.
Pl. send your replies at the following address:

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        SANJEEV KUMAR                             TEL>91-11-6863004
        IMMUNOBIOLOGY LABS                        FAX>91-11-6862125
        NATIONAL INSTITUTE OF IMMUNOLOGY        TELEX>031-66183 NII IN
        ARUNA ASAF ALI MARG                     GRAMS>IMMUNOLOGY
        NEW DELHI-67                            EMAIL> Sanjeev@NII.ernet.in

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