Re: repository for flow data files

From: Dave Coder (dave@nucleus.immunol.washington.edu)
Date: Wed Jul 28 1993 - 12:22:13 EST


I have a fairly good synoptic collection of data files composed of  
FCS formats (at last count about 30-odd variants), proprietary  
formats, etc. of list mode and histogram data. Many of the previous  
problems in reading data will disappear when everyone writing data  
files adheres to the standard described in FCS 2.0. Despite this  
panglossian musing, all the legacy data from previous years will be  
around to cause problems and it should be useful to have some  
reference material for verification.

As noted by previous posters, data files are one issue. Verified  
analysis of the data is another.This means both statistical analysis  
(do you get the same numbers as I do?), and more fundamentally, does  
your picture look like the "real" one? Gross problems such as byte  
order are quickly identified, but things like axis reversals on  
2-parameter histogram files may not be apparent. Reference pictures  
(device-independent PostScript or HP PCL files should have broad  
usability) would solve this problem.

So the data collection begins to sound like the standard zoological  
museum or herbarium: Type specimens are stored with complete  
taxonomic descriptions, illustrations of important features, and  
verification data by the collector/depositor. For future taxonomic  
work, such reference collections provide specimen data traceable to  
THE standard.[Just where in France is the meter bar these days?]

Of course the collection should be available over the Internet by  
anonymous ftp. This will require some (not much) disk space, a quick,  
multiuser computer with a reliable Internet connection, and somebody  
to maintain the collection. Once the archive is assembled, the time  
commitment of the Curator should not be large.  For those not yet  
with access to the Internet, the cost of making hardcopy (disk and/or  
prints) may be prohibitive in the absence of a person whose time is  
partially dedicated to the task.

The collection of data, provision of illustration files,  
verification, and the writing of documentation and user notes, will  
take time and effort. I'd be willing make a contribution.

Overall, it's probably an essential archive if a degree of  
commonality of data exchange is to be attained. 


Dave Coder
University of Washington
Internet: dcoder@u.washington.edu
tel. 206-685-3014
fax. 206-543-3480


And remember, the nice thing about standards is that there are so  
many to choose from.


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