Re: yeast cell cycle

From: Mark A. KuKuruga (kukuru@umich.edu)
Date: Thu Nov 02 2000 - 16:08:24 EST


Scott,
Algorithms used to fit these distributions often fail (or worse, give
questionable results) because the histograms don't fit  typical/expected
patterns -- plus, % c.v.'s are often not very good.  Therefore, I usually
use histogram stats for analysis.  Since most of the time you're interested
in development of increasing ploidy (as opposed to modeling s-phase), I
think this is sufficient.
But . . . I believe ModFit has a peak fitting function, no?  It is useful
for fitting curves like those seen with CFSE or PKH staining.  Check that
out.
MAK.

Scott Tighe wrote:

> Greetings fellow flowers
>
> Can anybody recommend the best way to model the cell cycle for budding
> yeasts? I currently use ModFit 2.0
> for our cancer studies, but it does not lead itself to budding yeasts.
> I am normally working with mammalian cells and do not have this trouble.
> Is there a standard method to set-up these experiments when ultimately
> one will need to model the yeast's cell cycle with curve-fitting
> software?
>
> Sincerely
>
> Scott Tighe
> Vermont Cancer Center
> University of Vermont
> 214A Medical Alumni Bd.
> Burlington, VT 05405

--
Mark A. KuKuruga, Managing Director
University of Michigan Core Flow Cytometry
<http://www.cancer.med.umich.edu/flow_cytometry>
phone: 734-647-3216  fax: 734-936-7376
kukuru@umich.edu



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