Exporting figures from cell quest: how?

From: Murali Ramanathan (murali@ACSU.Buffalo.EDU)
Date: Tue Mar 25 1997 - 21:25:07 EST


Hello everybody

I have had the same problem.  If you want classy
graphics you have several options and none of
them are simple.

There are several freeware/shareware programs
that can read files created by Cell Quest.

FCS Assistant ($25 shareware for the Macintosh) can
read these  files and convert them to ASCII.
You can then plot the data in the graphing program of
choice.  I am not sure whether FCS assistant allows
you to save gated files.  I havent used it much.

If you have a Windows machine, get WinMDI which
lets you save histograms in ASCII.  It also can save
gated histograms and dot plots.

Both FCS Assistant and WinMDI can be accessed from
the U Mass flow cytometry software page.
http://www.bio.umass.edu/mcbfacs/flowcat.html

Another approach is to scan the plots
of interest and then use DataThief (Available from the
NIH Image site, I dont know the URL) to "steal" the
x-y coordinates.  This is really useful if you dont
have acess to the original files and are stuck with
a lousy print out. Data Thief creates a text file that
can be read in any graphing program.  This does not
work for dot plots.


Hope that helps

Regards

Murali Ramanathan



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