I don't know about quenching, but phenol red certainly does fluoresce in
all channels on a FACScan.
At the very least it gives high backgrounds, sometimes makes the readings
completely useless.
Avoid it if possible!
Cheers, Joseph.
Joseph Webster (O.I.C. Flow Cytometry)
Centenary Institute of cancer Medicine & Cell Biology
Locked Bag No.6, Newtown, NSW 2042, AUSTRALIA.
Ph: 61-2-9565-6110 Fax: 61-2-9565-6101